韓葳葳個人簡歷 職稱:教授(博士生導師) 最高學位:博士 工作地點:吉林大學生命科學樓207室
研究方向:
1.酶結構與功能的關系
2.計算機輔助藥物設計
3.計算結構生物學
4. 機器學習
教育經歷:
2002.9-2007.6 吉林大學理論化學研究所 博士
1993.9-1997.7 東北師范大學化學系 學士
工作經歷:
2015.12-2016.12 密蘇里大學 訪問學者
2014.10-至今 分子酶學工程教育部重點實驗室 教授
2009.9-2014.9 分子酶學工程教育部重點實驗室 副教授
2007.7-2009.9 分子酶學工程教育部重點實驗室 講師
1997.9-2002.7 裝甲兵技術學院基礎部數學室 教員
研究成果:
文章:
1. Ye Liu , Yuzhong Wan, Jingxuan Zhu, Muxin Li, zhengfei Yu, Jiarui Han, Zuoming Zhang , WeiweiHan * Exploration of catalytic INVALIDivity for aminotransferase (BtrR) based on multiple molecular dynamics simulations. Int. J. Mol. Sci. 2019, 20(5):1188.
2. Jingxuan Zhu, Yi Li, Jinzhi Wang, Zhengfei Yu, Ye Liu, Yi Tong*, Weiwei Han*. Adaptive steered molecular dynamics combined with protein structure networks revealing the mechanism of Y68I/G109P mutations that enhance the catalytic activity of D-psicose 3-Epimerase from Clostridium Bolteae. Front. Chem. 2018, 6: 437.
3. Ye Liu, Zhengfei Yu, Jingxuan Zhu, Song Wang, Dong Xu*, Weiwei Han*. Why is a high temperature needed by thermus thermophilus argonaute during mRNA silencing: a theoretical study. Front. Chem. 2018, 6: 223.
4. Jingxuan Zhu, Yishuo Lv, Xiaosong Han, Dong Xu*, Weiwei Han*. Understanding the differences of the ligand binding/unbinding pathways between phosphorylated and non-phosphorylated ARH1 using molecular dynamics simulations. Sci. Rep., 2017, 7(1): 12439.
5. Ye Liu, Yan Wang, Jingxuan Zhu, Zhengfei Yu, Xiaopian Tian, Jiarui Han, Zuoming Zhang, Weiwei Han*. Theoretical study on zearalenol compounds binding with wild type zearalenone hydrolase and V153H mutant. Int. J. Mol. Sci. 2018, 19(9): 2808.
6. Mengdan Qian, Yaming Shan, Shanshan Guan, Hao Zhang, Weiwei Han*, Song Wang*. Structural basis of fullerene derivatives as novel potent Inhibitors of protein tyrosine phosphatase 1B: Insight into the inhibitory mechanism through molecular modeing studies. J. Chem. Inf. Model., 2016, 56(10): 2024-2034.
7. Weiwei Han*, Jingxuan Zhu, Song Wang, Dong Xu. Understanding the phosphorylation mechanism by using quantum chemical calculations and molecular dynamics simulations. J. Phys. Chem. B, 2017, 2121(15): 3565-3573.
8. Jingxuan Zhu, Yan Wang, Xin Li, Weiwei Han*, Li Zhao*. Understanding the interactions of different substrates with wild-type and mutant acylaminoacyl peptidase using molecular dynamics simulations. J. Biomol. Struct. Dyn., 2017, 20: 1-18.
9. Hanyong Jin, Jingxuan Zhu, Yang Dong, Weiwei Han*. Exploring the different ligand escape pathways in acylaminoacyl peptidase by random acceleration and steered molecular dynamics simulations. Rsc Adv., 2016, 6: 10987-10996.
10. Liyun Zou, Jingxuan Zhu, Yang Dong, Weiwei Han*, Yingjie Guo*, Hui Zhou*. Models for the binding channel of wild type and mutant transthyretin with glabridin. Rsc Adv., 2016, 6, 96816.
11. Shanshan Guan, Li Zhao, Hanyong Jin, Ning Shan, Weiwei Han*, Song Wang*, Yaming Shan*. Binding modes of phosphotriesterase-like lactonase complexed with δ-nonanoic lactone and paraoxon using molecular dynamics simulations. J. Biomol. Struct. Dyn., 2016, 35: 273.
12. Hanyong Jin, Zhenhuan Zhou, Dongmei Wang, Shanshan Guan, Weiwei Han*. Molecular dynamics simulations of acylpeptide hydrolase bound to Chlorpyrifosmethyl Oxon and Dichlorvos. Int. J. Mol. Sci., 2015, 16: 6217-6234.
13. Dongling Zhan, Shanshan Guan, Hanyong Jin, Weiwei Han*, Wang Song*. StereoINVALIDivity of phosphotriesterase with paraoxon derivatives: a computational study. J. Biomol. Struct. Dyn., 2016, 34(3): 600-11.
14. Dongmei Wang, Hanyong Jin, Junling Wang, Shanshan Guan, Zuoming Zhang, Weiwei Han*. Exploration of the chlorpyrifos escape pathway from acylpeptide hydrolases using steeredmolecular dynamics simulations. J. Biomol. Struct. Dyn., 2016, 34(4): 749-761.
15. Dongling Zhan, Aixi Bai, Lei Yu, Weiwei Han*, Feng Yan*. Characterization of the PH1704 protease from pyrococcus horikoshii OT3 and the critical functions of Tyr120. Plos One, 2014, 9: e103902.
16. Dongling Zhan, Dongmei Wang, Weihong Min*, Weiwei Han*. Exploring the molecular basis for INVALIDive binding of homoserine dehydrogenase from Mycobacterium leprae TN toward inhibitors: a virtual screening study. Int. J. Mol. Sci., 2014, 15: 1826-1841.
17. Dongling Zhan, Lei Yu, Hanyong Jin, Shanshan Guan, Weiwei Han*. Molecular modeling and MM-PBSA free energy analysis of endo-1,4-β-xylanase from Ruminococcus albus 8. Int. J. Mol. Sci., 2014, 15: 17284-17303.
18. Dongling Zhan, Zhenhuan Zhou, Shanshan Guan, Weiwei Han*. The effect of conformational variability of phosphotriesterase upon N-acyl-L-homoserine lactone and paraoxon binding: insights from molecular dynamics studies. Molecules, 2013, 18: 15501-15518.
19. Xun Sun, Mengdan Qian, Shanshan Guan, Yaming Shan, Ying Dong, Hao Zhang*, Song Wang*, Weiwei Han*. Investigation of an "alternate water supply system" in enzymatic hydrolysis in the processive endocellulase Cel7A from Rasamsonia emersonii by molecular dynamics simulation. Biopolymers, 2017, 107: 46-61.
20. Dongmei Yan, Weiwei Han, Zehua Dong, Qihui Liu, Zheng Jin, Dong Chu, Yuan Tian, Jinpei Zhang, Dandan Song, Dunhuang Wang, Xun Zhu*. Homology modeling and docking studies of ENPP4: a BCG activated tumoricidal macrophage protein. Lipids Health Dis., 2016, 28: 15-19.
21. Dongling Zhan, Weiwei Han*, Yan Feng*. Experimental and computational studies indicatethe mutation of Glu12 to increase the thermostability of oligomeric protease from Pyrococcus horikoshii. J. Mol. Model., 2011, 17: 1241–1249.
22. Weiwei Han, Ye Wang, Quan Luo, Yan Feng*. Insights into a 3D homology model of arylesterase: the key residues upon protein-ligand docking and MM-PBSA calculations. J. Theor. Comput. Chem., 2011, 10: 165-177.
23. Weiwei Han, Dongling Zhan, Quan Luo, Yihan Zhou, Yuan Yao, Zesheng Li, Yan Feng*. The substrate specificity and the catalytic mechanism of N-carbamyl-D-amino acid amidohydrolase: a theoretical investigation. Chem. Phys. Lett., 2009, 472: 107-112.
24. Weiwei Han, Ying Wang, Yihan Zhou, Yuan Yao, Zesheng Li*, Yan Feng*. Understanding structural/functional properties of amidase from rhodococcus erythropolis by computational approaches. J. Mol. Model., 2009, 15: 481-487.
25. Weiwei Han,Dongling Zhan, Xi Zhao, Song Wang*.. Computational investigation on the ethylene-induced esterase from Citrus sinensis. Chem. Res. Chinese U., 2009, 26(1): 128-135.
26. Yuexi Wang, Ye Wang, Weiwei Han*, Yan Feng*. Improving the enzyme sensitivity of the organophosphorous compounds by combining experiment and theory methods. Chem. Res. Chinese U., 2012, 28(4): 707-711.
27. Weiwei Han, Yihan Zhou, Quan Luo,Yuan Yao, Zesheng Li*. On the 3D structure and catalytic mechanism study of AmiF formamidase of Helicobacter pylori. Polymer, 2007, 48: 3726-3731.
28. Weiwei Han, Yihan Zhou, Yuan Yao, Zesheng Li*. The three-dimensional structure of human aurora-C kinase predicted by homology modeling and docking study. J. Mol. Struct., 2007, 815: 87-93.
29. Weiwei Han, Yihan Zhou, YuanYao, Zehheng Li*. Computational studies on bergaptol O-methyltransferase from Ammi majus L.: The substrate specificity. Polymer, 2006, 47: 7953-7961.
30. Weiwei Han, Zesheng Li, Qingchuan Zheng, Chiachung Sun. Homology modeling and molecular dynamics studies on the tomato methyl jasmonate esterase. Polymer, 2006, 47: 1436-1442.
31. Weiwei Han, Zesheng Li, Qingchuan Zheng, Chiachung Sun. Toward a blueprint for ?-Primeverosidase from tea leaves structure/function properties: Homology modeling study. J. Theor. Comput. Chem., 2006, 5: 433-446.
32. Dongling Zhan, Nan Gao, Weiwei Han, Yan Feng. Quantum Chemistry Calculation of Thermophilic Protease PH1704 Allosteric Center and Mutant Dynamics. Chem. Res. Chinese U., 2014, 35(1): 146-153.
33. Yuan Yao, Weiwei Han, Yihan Zhou, Zesheng Li*, Qiang Li, Xiaoyan Chen, Dafang Zhong*. The metabolism of CYP2C9 and CYP2C19 for gliclazide by homology modeling and docking study. Eur. J. Med. Chem., 2009, 44: 854-861.
34. Quan Luo, Weiwei Han, Yihan Zhou, Yuan Yao, Zesheng Li*. The 3D Structure of the defense-related rice protein Pir7b predicted by homology modeling and ligand binding studies. J. Mol. Model., 2008, 14: 559-569.
35. Yuan Yao, Weiwei Han, Yihan Zhou, Zesheng Li*, Qiang Li, Xiaoyan Chen, Dafang Zhong*. Catalytic reaction mechanism of human photoreceptor retinol dehydrogenase: A theoretical study. J. Theor. Comput. Chem., 2008, 7: 565-578.
36. Yuan Yao, Weiwei Han, Yihan Zhou, Zesheng Li*. The 3D-structure and catalytic reaction mechanism of human photoreceptor retinol dehydrogenase. Polymer, 2007, 48: 2644-2648.
37. Yuan Yao, Weiwei Han, Yihan Zhou, Zesheng Li*. Molecular docking study of the affinity of CYP2C9 and CYP2D6 for Imrecoxib. J. Theor. Comput. Chem., 2007, 6: 514-548.
38. Chuan Xiao, Chao Sun, Weiwei Han, Feng Pan, Zhu Dan, Yu Li, Zhiguang Song, Yinghua Jin*. Synthesis of 6-(het) ary Xylocydine analogues and evaluating their inhibitory activities of CDK1 and CDK2 in vitro. Bloorgan Med. Chem., 2011, 19: 7100–7110.
39. Quan Luo, Yuan Yao, Weiwei Han, Yihan Zhou, Zesheng Li*. Homology modeling of a novel epoxide hydrolase (EH) from Aspergillus niger SQ-6: structure-activity relationship in expoxides inhibiting EH activity. J. Mol. Model., 2009, 15: 1125-1132.
項目:
1. 吉林省科技發展極化項目 嗜熱內脂酶:基于大分子反應通道的分子設計(3D517G951465), 2017. 1-2019.12
2. 吉林省重大科技攻關項目 高效有機磷水解酶的制備及其在消除果蔬農藥殘留中的應用 (20140203025NY),2014.1-2016.
3. 973計劃子課題 幾類微生物代謝中的重要酶的結構與催化反應機理的理論研究(2012CB721003),2012.1-2016.12